Outputs¶
WOLAND provide different set of outputs depending on the script used - and how far you want to go in your mutational pattern analysis. woland-batch.pl
runs the most complete analysis but you must have at least two groups of samples (a control and a treated group, for example).
Note
woland-batch.pl
provides the faster and straighforward way to analyze samples. It runs woland-anno.pl
for each sample then runs woland-report.pl
.
woland-anno.pl basic outputs¶
This script will analyze each ANNOVAR variant_function
files and will provide a total of 13 tabular text files + 1 log file. We consider these output files as the most raw type of WOLAND analysis. Let’s take a look at each class and its output files explanations:
Note
All woland-anno.pl
outputs were saved in a results-$sample_name/
folder.
Extracted context sequences¶
WOLAND-contextsequences-$sample_name
:
WOLAND-contextsequencesanno-$sample_name
:
Hotspots¶
WOLAND-hotspots-$sample_name
:
Transcriptional strand bias¶
WOLAND-bias_motif-$sample_name
: